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SQL Replication

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I have configured a SQL transaction replication to create two subscribers and one publisher, the question is that after any deployment and changes that made on the SQL "alter procedures" on the publisher server, the replication log several errors and i solved the issue by re establish the snapshot.

is there anything that i should do during the deployment "run the updated script on the publisher" ? should i stop the application to not log any transaction during the deployment, or take the DB offline?


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